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Differential Gene Expression of TRPM1, the Potential Cause of Congenital Stationary Night Blindness and Coat Spotting Patterns (LP) in the Appaloosa Horse (Equus caballus)
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2516064/
Fine-mapping and mutation analysis of TRPM1: a candidate gene for leopard complex (LP) spotting and congenital stationary night blindness in horses
http://bfg.oxfordjournals.org/content/9/3/193.abstract
Missense Mutation in Exon 2 of SLC36A1 Responsible for Champagne Dilution in Horses
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2535566/
Coat Color Variation at the Beginning of Horse Domestication
http://www.sciencemag.org/content/324/5926/485.full
A mutation in the MATP gene causes the cream coat colour in the horse.
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2732686/pdf/1297-9686-35-1-1...
The cream dilution gene, responsible for the palomino and buckskin coat colours, maps to horse chromosome 21.
http://www.ncbi.nlm.nih.gov/pubmed/11736803
A missense mutation in the gene for melanocyte-stimulating hormone receptor (MCIR) is associated with the chestnut coat color in horses
http://www.springerlink.com/content/mq1rb1u8380yupxp/
Identification of horse chestnut coat color genotype using SNaPshot® (contains some information on the alternative chestnut allele ea)
http://www.biomedcentral.com/content/pdf/1756-0500-2-255.pdf
A cis-acting regulatory mutation causes premature hair graying and susceptibility to melanoma in the horse
http://www.nature.com/ng/journal/v40/n8/abs/ng.185.html
Allelic Heterogeneity at the Equine KIT Locus in Dominant White (W) Horses
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2065884/
Equine KIT Gene Mutations (Not published to a scientific journal but a very good reference none-the-less.)
http://duncentralstation.com/PDF/KITGeneMutations-Castle.pdf
Close association between sequence polymorphism in the KIT gene and the roan coat color in horses
http://www.springerlink.com/content/42079uyy8vprhw7a/
Exon skipping in the KIT gene causes a Sabino spotting pattern in horses.
http://www.ncbi.nlm.nih.gov/pubmed/16284805
An equine chromosome 3 inversion is associated with the tobiano spotting pattern in German horse breeds.
http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2052.2008.01715.x/abst...
De novo mutation of KIT discovered as a result of a non-hereditary white coat colour pattern
http://onlinelibrary.wiley.com/doi/10.1111/j.1365-2052.2010.02135.x/full
Whole-Genome SNP Association in the Horse: Identification of a Deletion in Myosin Va Responsible for Lavender Foal Syndrome
http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1000909
Incidence of the endothelin receptor B mutation that causes lethal white foal syndrome in white-patterned horses.
http://www.ncbi.nlm.nih.gov/pubmed/11197568
Mutations in MITF and PAX3 Cause “Splashed White” and Other White Spotting Phenotypes in Horses
http://www.plosgenetics.org/article/info:doi/10.1371/journal.pgen.1002653
A missense mutation in PMEL17 is associated with the Silver coat color in the horse
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC1617113/
Multiple congenital ocular anomalies in Icelandic horses
http://www.biomedcentral.com/1746-6148/7/21
Common White Facial Markings in Bay and Chestnut Arabian Horses and Their Hybrids
http://jhered.oxfordjournals.org/content/82/2/167.long
Many people on the http://colorgenetics.info/equine/forum were involved in the creation of this list. I would like to thank everyone who helped compile it.
